Top cofit genes for HMPREF1078_RS12640 from Parabacteroides merdae CL09T00C40

RluA family pseudouridine synthase
SEED: Ribosomal large subunit pseudouridine synthase D (EC 4.2.1.70)
KEGG: ribosomal large subunit pseudouridine synthase D

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HMPREF1078_RS16110		hypothetical protein	no	0.70
2	HMPREF1078_RS04355		hypothetical protein	no	0.69
3	HMPREF1078_RS16115		hypothetical protein	no	0.67
4	HMPREF1078_RS12115		thioredoxin	no	0.67
5	HMPREF1078_RS14620		DNA replication and repair protein RecF	no	0.64
6	HMPREF1078_RS03090		helix-turn-helix transcriptional regulator	no	0.64
7	HMPREF1078_RS02175		patatin-like phospholipase family protein	no	0.64
8	HMPREF1078_RS13015		Holliday junction branch migration protein RuvA	0.64	0.64
9	HMPREF1078_RS12450		carbamoyl-phosphate synthase (glutamine-hydrolyzing) large subunit	0.42	0.62
10	HMPREF1078_RS03560		3'-5' exonuclease	0.65	0.62
11	HMPREF1078_RS04015		hypothetical protein	no	0.62
12	HMPREF1078_RS04110		hypothetical protein	no	0.61
13	HMPREF1078_RS10470		glycosyltransferase	no	0.61
14	HMPREF1078_RS10465		hypothetical protein	no	0.61
15	HMPREF1078_RS08505		glycosyltransferase family 39 protein	0.63	0.61
16	HMPREF1078_RS10475		glycosyltransferase family 4 protein	no	0.60
17	HMPREF1078_RS08395		DNA repair protein RadA	0.77	0.60
18	HMPREF1078_RS17480		glycosyltransferase	no	0.60
19	HMPREF1078_RS00925		UpxY family transcription antiterminator	no	0.60
20	HMPREF1078_RS10885		tyrosine recombinase XerC	no	0.59

Or look for negative cofitness