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  • Top cofit genes for HMPREF1078_RS10545 from Parabacteroides merdae CL09T00C40

    AI-2E family transporter
    SEED: membrane protein, putative

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS07275 DUF4493 domain-containing protein 0.25 0.53
    2 HMPREF1078_RS19395 hypothetical protein no 0.52
    3 HMPREF1078_RS00265 hypothetical protein no 0.49
    4 HMPREF1078_RS04785 nucleoside deaminase 0.33 0.49
    5 HMPREF1078_RS09080 DUF3872 domain-containing protein no 0.48
    6 HMPREF1078_RS15750 cation:proton antiporter no 0.47
    7 HMPREF1078_RS10460 metallophosphoesterase no 0.47
    8 HMPREF1078_RS04970 alpha/beta hydrolase no 0.47
    9 HMPREF1078_RS11500 TonB-dependent receptor no 0.46
    10 HMPREF1078_RS05035 site-specific integrase no 0.46
    11 HMPREF1078_RS13615 RNA polymerase sigma factor no 0.45
    12 HMPREF1078_RS03065 hypothetical protein no 0.45
    13 HMPREF1078_RS04435 ParB/RepB/Spo0J family partition protein no 0.45
    14 HMPREF1078_RS06005 carbohydrate kinase no 0.45
    15 HMPREF1078_RS15290 8-amino-7-oxononanoate synthase no 0.45
    16 HMPREF1078_RS11605 DUF4468 domain-containing protein no 0.44
    17 HMPREF1078_RS16625 DUF6383 domain-containing protein no 0.44
    18 HMPREF1078_RS11770 hypothetical protein no 0.44
    19 HMPREF1078_RS09715 3-methyl-2-oxobutanoate hydroxymethyltransferase 0.30 0.43
    20 HMPREF1078_RS07285 hypothetical protein no 0.43

    Or look for negative cofitness