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  • Top cofit genes for HMPREF1078_RS10345 from Parabacteroides merdae CL09T00C40

    DcaP family trimeric outer membrane transporter
    SEED: FIG00404901: hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS08790 ABC-F family ATP-binding cassette domain-containing protein no 0.50
    2 HMPREF1078_RS15010 DNA polymerase IV no 0.48
    3 HMPREF1078_RS10080 HAD-IA family hydrolase no 0.47
    4 HMPREF1078_RS02425 DUF6261 family protein no 0.46
    5 HMPREF1078_RS16120 outer membrane beta-barrel protein no 0.46
    6 HMPREF1078_RS03190 restriction endonuclease subunit S no 0.46
    7 HMPREF1078_RS14955 methionine synthase no 0.45
    8 HMPREF1078_RS02130 hybrid sensor histidine kinase/response regulator no 0.45
    9 HMPREF1078_RS12850 TonB-dependent receptor no 0.44
    10 HMPREF1078_RS17785 MFS transporter no 0.44
    11 HMPREF1078_RS12145 TolC family protein no 0.44
    12 HMPREF1078_RS13250 hypothetical protein no 0.44
    13 HMPREF1078_RS09675 purine nucleoside phosphorylase I, inosine and guanosine-specific no 0.44
    14 HMPREF1078_RS16840 glucosaminidase domain-containing protein no 0.43
    15 HMPREF1078_RS06710 hypothetical protein no 0.43
    16 HMPREF1078_RS08250 alpha/beta fold hydrolase no 0.43
    17 HMPREF1078_RS07675 FKBP-type peptidyl-prolyl cis-trans isomerase no 0.43
    18 HMPREF1078_RS05425 TonB-dependent receptor no 0.43
    19 HMPREF1078_RS09900 two-component regulator propeller domain-containing protein no 0.43
    20 HMPREF1078_RS16365 GH92 family glycosyl hydrolase no 0.43

    Or look for negative cofitness