Top cofit genes for HMPREF1078_RS09985 from Parabacteroides merdae CL09T00C40

substrate-binding domain-containing protein
SEED: DNA-binding response regulator, AraC family

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HMPREF1078_RS04375		hypothetical protein	no	0.78
2	HMPREF1078_RS10095		ABC transporter permease	0.35	0.77
3	HMPREF1078_RS12185		hypothetical protein	no	0.75
4	HMPREF1078_RS07555		phosphoethanolamine transferase	no	0.75
5	HMPREF1078_RS12595		inositol monophosphatase family protein	no	0.75
6	HMPREF1078_RS10090		ABC transporter permease	0.38	0.74
7	HMPREF1078_RS10100		efflux RND transporter periplasmic adaptor subunit	0.34	0.73
8	HMPREF1078_RS10105		TolC family protein	0.41	0.72
9	HMPREF1078_RS14735		endolytic transglycosylase MltG	no	0.72
10	HMPREF1078_RS01875		hypothetical protein	0.33	0.72
11	HMPREF1078_RS01045		2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	no	0.71
12	HMPREF1078_RS01820		HU family DNA-binding protein	no	0.70
13	HMPREF1078_RS04130		hypothetical protein	no	0.69
14	HMPREF1078_RS13130		Fur family transcriptional regulator	no	0.69
15	HMPREF1078_RS15260		M23 family metallopeptidase	no	0.69
16	HMPREF1078_RS15155		hybrid sensor histidine kinase/response regulator transcription factor	no	0.69
17	HMPREF1078_RS07850		AAA family ATPase	no	0.69
18	HMPREF1078_RS14445		hypothetical protein	no	0.69
19	HMPREF1078_RS14940		hypothetical protein	no	0.69
20	HMPREF1078_RS06915		head GIN domain-containing protein	no	0.69

Or look for negative cofitness