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  • Top cofit genes for HMPREF1078_RS09835 from Parabacteroides merdae CL09T00C40

    YebC/PmpR family DNA-binding transcriptional regulator
    SEED: FIG000859: hypothetical protein YebC

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS09970 translation elongation factor 4 0.69 0.91
    2 HMPREF1078_RS04420 RelA/SpoT family protein 0.27 0.88
    3 HMPREF1078_RS05905 Na/Pi cotransporter family protein 0.49 0.86
    4 HMPREF1078_RS04925 elongation factor P 0.78 0.86
    5 HMPREF1078_RS14500 type III pantothenate kinase no 0.85
    6 HMPREF1078_RS13775 response regulator no 0.84
    7 HMPREF1078_RS06930 DUF5668 domain-containing protein no 0.81
    8 HMPREF1078_RS13785 DUF87 domain-containing protein no 0.81
    9 HMPREF1078_RS04125 16S rRNA (cytidine(1402)-2'-O)-methyltransferase 0.64 0.81
    10 HMPREF1078_RS00105 radical SAM protein no 0.81
    11 HMPREF1078_RS13780 HAMP domain-containing histidine kinase no 0.81
    12 HMPREF1078_RS04160 Mur ligase family protein no 0.81
    13 HMPREF1078_RS10615 C1 family peptidase no 0.80
    14 HMPREF1078_RS13805 site-specific DNA-methyltransferase no 0.80
    15 HMPREF1078_RS01630 YjbH domain-containing protein no 0.80
    16 HMPREF1078_RS06345 redox-regulated ATPase YchF 0.81 0.80
    17 HMPREF1078_RS17205 cellulase family glycosylhydrolase no 0.80
    18 HMPREF1078_RS11120 TatD family hydrolase 0.40 0.80
    19 HMPREF1078_RS13800 DEAD/DEAH box helicase family protein no 0.79
    20 HMPREF1078_RS13790 AAA family ATPase no 0.79

    Or look for negative cofitness