Top cofit genes for HMPREF1078_RS09050 from Parabacteroides merdae CL09T00C40

conjugative transposon protein TraK

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HMPREF1078_RS01900		hypothetical protein	no	0.44
2	HMPREF1078_RS16415		Do family serine endopeptidase	no	0.42
3	HMPREF1078_RS12020		fimbrial protein	no	0.40
4	HMPREF1078_RS00655		uracil phosphoribosyltransferase	no	0.39
5	HMPREF1078_RS08670		hypothetical protein	no	0.39
6	HMPREF1078_RS14820		hypothetical protein	no	0.37
7	HMPREF1078_RS11710		hypothetical protein	no	0.36
8	HMPREF1078_RS16520		tRNA-Phe	no	0.35
9	HMPREF1078_RS05270		TrpB-like pyridoxal phosphate-dependent enzyme	no	0.35
10	HMPREF1078_RS15210		FecR family protein	no	0.35
11	HMPREF1078_RS09820		peroxide stress protein YaaA	no	0.35
12	HMPREF1078_RS15515		glycoside hydrolase family 2 TIM barrel-domain containing protein	no	0.35
13	HMPREF1078_RS16760		DUF4837 family protein	no	0.34
14	HMPREF1078_RS00990		DUF6261 family protein	no	0.34
15	HMPREF1078_RS14215		PhoH family protein	no	0.34
16	HMPREF1078_RS02030		malate dehydrogenase	no	0.32
17	HMPREF1078_RS07810		RagB/SusD family nutrient uptake outer membrane protein	no	0.32
18	HMPREF1078_RS03560		3'-5' exonuclease	no	0.32
19	HMPREF1078_RS17165		DUF2264 domain-containing protein	no	0.32
20	HMPREF1078_RS09570		alpha/beta hydrolase fold domain-containing protein	no	0.32

Or look for negative cofitness