Top cofit genes for HMPREF1078_RS09035 from Parabacteroides merdae CL09T00C40

DUF3876 domain-containing protein
SEED: Conjugative transposon protein TraH

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HMPREF1078_RS17560		adenosylhomocysteinase	no	0.62
2	HMPREF1078_RS13935		hypothetical protein	no	0.59
3	HMPREF1078_RS11815		gamma-glutamyl-gamma-aminobutyrate hydrolase family protein	no	0.58
4	HMPREF1078_RS07850		AAA family ATPase	no	0.55
5	HMPREF1078_RS04415		DUF3127 domain-containing protein	no	0.54
6	HMPREF1078_RS10440		DUF4199 domain-containing protein	no	0.54
7	HMPREF1078_RS17465		glycosyltransferase	no	0.54
8	HMPREF1078_RS16130		bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase	0.25	0.53
9	HMPREF1078_RS12250		TlpA disulfide reductase family protein	no	0.53
10	HMPREF1078_RS17255		HAMP domain-containing sensor histidine kinase	no	0.53
11	HMPREF1078_RS12805		glycoside hydrolase family 76 protein	no	0.52
12	HMPREF1078_RS10775		alpha/beta hydrolase	no	0.52
13	HMPREF1078_RS13700		DNA translocase FtsK	no	0.52
14	HMPREF1078_RS00815		DUF4827 family protein	no	0.51
15	HMPREF1078_RS15055		CRISPR-associated helicase/endonuclease Cas3	no	0.51
16	HMPREF1078_RS12595		inositol monophosphatase family protein	no	0.51
17	HMPREF1078_RS06980		tRNA threonylcarbamoyladenosine dehydratase	no	0.51
18	HMPREF1078_RS10095		ABC transporter permease	no	0.51
19	HMPREF1078_RS02700		polysaccharide biosynthesis/export family protein	no	0.50
20	HMPREF1078_RS10100		efflux RND transporter periplasmic adaptor subunit	no	0.50

Or look for negative cofitness