Top cofit genes for HMPREF1078_RS08960 from Parabacteroides merdae CL09T00C40

sigma-54 dependent transcriptional regulator
SEED: tetracycline resistance element regulator RteB - Bacteroides thetaiotaomicron

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HMPREF1078_RS00440		potassium transporter TrkG	no	0.45
2	HMPREF1078_RS07095		TonB-dependent receptor	no	0.44
3	HMPREF1078_RS15070		CRISPR-associated protein Cas4	no	0.42
4	HMPREF1078_RS01780		family 78 glycoside hydrolase catalytic domain	no	0.42
5	HMPREF1078_RS19210		hypothetical protein	no	0.42
6	HMPREF1078_RS06360		acyltransferase	no	0.41
7	HMPREF1078_RS15235		glycoside hydrolase family 2 TIM barrel-domain containing protein	no	0.41
8	HMPREF1078_RS00465		monofunctional biosynthetic peptidoglycan transglycosylase	no	0.40
9	HMPREF1078_RS12915		alpha/beta hydrolase	no	0.40
10	HMPREF1078_RS20035		tyrosine-type recombinase/integrase	no	0.40
11	HMPREF1078_RS00120		tryptophan synthase subunit alpha	no	0.40
12	HMPREF1078_RS07600		YqgE/AlgH family protein	no	0.39
13	HMPREF1078_RS13685		class I SAM-dependent rRNA methyltransferase	no	0.39
14	HMPREF1078_RS15655		hypothetical protein	no	0.39
15	HMPREF1078_RS06915		head GIN domain-containing protein	no	0.38
16	HMPREF1078_RS05120		DUF5906 domain-containing protein	no	0.38
17	HMPREF1078_RS14760		alpha-L-rhamnosidase C-terminal domain-containing protein	no	0.38
18	HMPREF1078_RS03710		hybrid sensor histidine kinase/response regulator	no	0.38
19	HMPREF1078_RS20045		FecR domain-containing protein	no	0.38
20	HMPREF1078_RS15165		glycoside hydrolase family 127 protein	no	0.38

Or look for negative cofitness