Top cofit genes for HMPREF1078_RS08925 from Parabacteroides merdae CL09T00C40

helix-turn-helix domain-containing protein
SEED: FIG00938987: hypothetical protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HMPREF1078_RS11590		glutamate formimidoyltransferase	no	0.55
2	HMPREF1078_RS10350		peptidylprolyl isomerase	no	0.51
3	HMPREF1078_RS03585		RagB/SusD family nutrient uptake outer membrane protein	no	0.50
4	HMPREF1078_RS02030		malate dehydrogenase	no	0.49
5	HMPREF1078_RS17720		redoxin domain-containing protein	no	0.48
6	HMPREF1078_RS01405		hypothetical protein	no	0.47
7	HMPREF1078_RS03220		hypothetical protein	no	0.47
8	HMPREF1078_RS11950		CvpA family protein	no	0.47
9	HMPREF1078_RS17610		PD40 domain-containing protein	no	0.46
10	HMPREF1078_RS03160		type I restriction endonuclease subunit R	no	0.46
11	HMPREF1078_RS00680		glycoside hydrolase family 97 protein	no	0.46
12	HMPREF1078_RS05705		family 43 glycosylhydrolase	no	0.46
13	HMPREF1078_RS07060		phosphatase PAP2 family protein	no	0.45
14	HMPREF1078_RS08395		DNA repair protein RadA	no	0.45
15	HMPREF1078_RS12785		S8 family serine peptidase	no	0.45
16	HMPREF1078_RS09005		DUF3408 domain-containing protein	no	0.45
17	HMPREF1078_RS08110		ABC transporter permease	no	0.45
18	HMPREF1078_RS13310		DUF4286 family protein	no	0.45
19	HMPREF1078_RS09645		NAD(P)-dependent oxidoreductase	no	0.44
20	HMPREF1078_RS05990		alanine/glycine:cation symporter family protein	no	0.44

Or look for negative cofitness