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Cofit
Protein
Homologs
Top cofit genes for HMPREF1078_RS08665 from
Parabacteroides merdae CL09T00C40
GtrA family protein
SEED: GtrA family protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HMPREF1078
_RS04145
peptide chain release factor 3
no
0.70
2
HMPREF1078
_RS11480
TonB-dependent receptor
no
0.69
3
HMPREF1078
_RS06840
polysaccharide deacetylase family protein
no
0.69
4
HMPREF1078
_RS08660
glycosyltransferase family 2 protein
no
0.68
5
HMPREF1078
_RS07655
TonB-dependent receptor
no
0.67
6
HMPREF1078
_RS07660
hypothetical protein
no
0.67
7
HMPREF1078
_RS14545
adenylyltransferase/cytidyltransferase family protein
no
0.66
8
HMPREF1078
_RS00030
HAD-IIIA family hydrolase
no
0.66
9
HMPREF1078
_RS03625
TldD/PmbA family protein
no
0.65
10
HMPREF1078
_RS13655
efflux RND transporter periplasmic adaptor subunit
no
0.65
11
HMPREF1078
_RS14500
type III pantothenate kinase
no
0.65
12
HMPREF1078
_RS00105
radical SAM protein
no
0.64
13
HMPREF1078
_RS09835
YebC/PmpR family DNA-binding transcriptional regulator
no
0.64
14
HMPREF1078
_RS13660
efflux RND transporter permease subunit
no
0.64
15
HMPREF1078
_RS13650
hypothetical protein
no
0.64
16
HMPREF1078
_RS04160
Mur ligase family protein
no
0.63
17
HMPREF1078
_RS03620
TldD/PmbA family protein
no
0.63
18
HMPREF1078
_RS04440
AAA family ATPase
no
0.62
19
HMPREF1078
_RS05840
lipopolysaccharide biosynthesis protein
no
0.62
20
HMPREF1078
_RS17750
long-chain fatty acid--CoA ligase
no
0.61
Or look for
negative cofitness