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  • Top cofit genes for HMPREF1078_RS08665 from Parabacteroides merdae CL09T00C40

    GtrA family protein
    SEED: GtrA family protein

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS04145 peptide chain release factor 3 no 0.70
    2 HMPREF1078_RS11480 TonB-dependent receptor no 0.69
    3 HMPREF1078_RS06840 polysaccharide deacetylase family protein no 0.69
    4 HMPREF1078_RS08660 glycosyltransferase family 2 protein no 0.68
    5 HMPREF1078_RS07655 TonB-dependent receptor no 0.67
    6 HMPREF1078_RS07660 hypothetical protein no 0.67
    7 HMPREF1078_RS14545 adenylyltransferase/cytidyltransferase family protein no 0.66
    8 HMPREF1078_RS00030 HAD-IIIA family hydrolase no 0.66
    9 HMPREF1078_RS03625 TldD/PmbA family protein no 0.65
    10 HMPREF1078_RS13655 efflux RND transporter periplasmic adaptor subunit no 0.65
    11 HMPREF1078_RS14500 type III pantothenate kinase no 0.65
    12 HMPREF1078_RS00105 radical SAM protein no 0.64
    13 HMPREF1078_RS09835 YebC/PmpR family DNA-binding transcriptional regulator no 0.64
    14 HMPREF1078_RS13660 efflux RND transporter permease subunit no 0.64
    15 HMPREF1078_RS13650 hypothetical protein no 0.64
    16 HMPREF1078_RS04160 Mur ligase family protein no 0.63
    17 HMPREF1078_RS03620 TldD/PmbA family protein no 0.63
    18 HMPREF1078_RS04440 AAA family ATPase no 0.62
    19 HMPREF1078_RS05840 lipopolysaccharide biosynthesis protein no 0.62
    20 HMPREF1078_RS17750 long-chain fatty acid--CoA ligase no 0.61

    Or look for negative cofitness