Top cofit genes for HMPREF1078_RS07690 from Parabacteroides merdae CL09T00C40

multidrug efflux RND transporter permease subunit
SEED: RND efflux system, inner membrane transporter CmeB

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HMPREF1078_RS12850		TonB-dependent receptor	no	0.70
2	HMPREF1078_RS11895		TonB-dependent receptor	no	0.68
3	HMPREF1078_RS11885		sigma-70 family RNA polymerase sigma factor	no	0.67
4	HMPREF1078_RS13470		helix-turn-helix transcriptional regulator	no	0.66
5	HMPREF1078_RS12240		NAD(+) diphosphatase	no	0.66
6	HMPREF1078_RS11900		RagB/SusD family nutrient uptake outer membrane protein	no	0.65
7	HMPREF1078_RS15230		family 43 glycosylhydrolase	no	0.65
8	HMPREF1078_RS11890		FecR domain-containing protein	no	0.64
9	HMPREF1078_RS06460		arylsulfatase	no	0.63
10	HMPREF1078_RS15565		N-acetylglucosamine-6-phosphate deacetylase	no	0.63
11	HMPREF1078_RS05430		RagB/SusD family nutrient uptake outer membrane protein	no	0.62
12	HMPREF1078_RS08250		alpha/beta fold hydrolase	no	0.61
13	HMPREF1078_RS14100		TonB-dependent receptor	no	0.61
14	HMPREF1078_RS10680		acyloxyacyl hydrolase	no	0.61
15	HMPREF1078_RS10085		sugar phosphate isomerase/epimerase	no	0.61
16	HMPREF1078_RS01280		RecQ family ATP-dependent DNA helicase	no	0.61
17	HMPREF1078_RS15540		RagB/SusD family nutrient uptake outer membrane protein	no	0.60
18	HMPREF1078_RS05025		PAS domain-containing sensor histidine kinase	no	0.60
19	HMPREF1078_RS14960		DUF3810 domain-containing protein	no	0.60
20	HMPREF1078_RS06715		TIM barrel protein	no	0.59

Or look for negative cofitness