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  • Top cofit genes for HMPREF1078_RS06985 from Parabacteroides merdae CL09T00C40

    family 20 glycosylhydrolase
    SEED: Beta-hexosaminidase (EC 3.2.1.52)
    KEGG: hexosaminidase

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS02370 transglycosylase SLT domain-containing protein no 0.44
    2 HMPREF1078_RS01000 M56 family metallopeptidase no 0.44
    3 HMPREF1078_RS19440 hypothetical protein no 0.43
    4 HMPREF1078_RS17095 hypothetical protein no 0.40
    5 HMPREF1078_RS00635 sugar phosphate isomerase/epimerase family protein no 0.39
    6 HMPREF1078_RS19405 hypothetical protein no 0.38
    7 HMPREF1078_RS15655 hypothetical protein no 0.38
    8 HMPREF1078_RS13490 arsenate reductase family protein no 0.37
    9 HMPREF1078_RS17520 hypothetical protein no 0.35
    10 HMPREF1078_RS16600 AraC family transcriptional regulator no 0.35
    11 HMPREF1078_RS07245 YifB family Mg chelatase-like AAA ATPase 0.22 0.34
    12 HMPREF1078_RS06435 RagB/SusD family nutrient uptake outer membrane protein no 0.34
    13 HMPREF1078_RS19520 hypothetical protein no 0.34
    14 HMPREF1078_RS19775 hypothetical protein no 0.34
    15 HMPREF1078_RS14025 DUF4374 domain-containing protein no 0.34
    16 HMPREF1078_RS15050 VapE family protein no 0.33
    17 HMPREF1078_RS03845 5S ribosomal RNA no 0.33
    18 HMPREF1078_RS07055 2-aminoethylphosphonate--pyruvate transaminase no 0.33
    19 HMPREF1078_RS09310 DUF3876 domain-containing protein no 0.33
    20 HMPREF1078_RS13510 MFS transporter no 0.33

    Or look for negative cofitness