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  • Top cofit genes for HMPREF1078_RS06970 from Parabacteroides merdae CL09T00C40

    sodium-dependent transporter
    SEED: Sodium-dependent transporter
    KEGG: neurotransmitter:Na+ symporter, NSS family

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS05910 nucleoside kinase no 0.62
    2 HMPREF1078_RS15465 hypoxanthine phosphoribosyltransferase no 0.56
    3 HMPREF1078_RS01880 universal stress protein no 0.55
    4 HMPREF1078_RS01450 cytochrome c biogenesis protein CcsA no 0.55
    5 HMPREF1078_RS11925 RNA polymerase sigma-70 factor no 0.52
    6 HMPREF1078_RS17750 long-chain fatty acid--CoA ligase no 0.51
    7 HMPREF1078_RS13310 DUF4286 family protein no 0.51
    8 HMPREF1078_RS06495 TolC family protein no 0.50
    9 HMPREF1078_RS11870 TonB-dependent receptor no 0.49
    10 HMPREF1078_RS12885 GH92 family glycosyl hydrolase no 0.49
    11 HMPREF1078_RS08510 Gfo/Idh/MocA family oxidoreductase no 0.46
    12 HMPREF1078_RS01335 porin family protein 0.32 0.46
    13 HMPREF1078_RS03830 Helicase associated domain protein no 0.45
    14 HMPREF1078_RS09115 PcfK-like family protein 0.43 0.44
    15 HMPREF1078_RS10735 adenosylcobalamin-dependent ribonucleoside-diphosphate reductase 0.37 0.44
    16 HMPREF1078_RS00940 hypothetical protein no 0.44
    17 HMPREF1078_RS19775 hypothetical protein no 0.44
    18 HMPREF1078_RS00915 GH92 family glycosyl hydrolase no 0.44
    19 HMPREF1078_RS11865 RagB/SusD family nutrient uptake outer membrane protein no 0.44
    20 HMPREF1078_RS01145 Dps family protein 0.41 0.44

    Or look for negative cofitness