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  • Top cofit genes for HMPREF1078_RS04255 from Parabacteroides merdae CL09T00C40

    porin
    SEED: FIG00897404: hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS04180 prolyl oligopeptidase family serine peptidase no 0.39
    2 HMPREF1078_RS14255 TonB-dependent receptor no 0.39
    3 HMPREF1078_RS05955 PaaI family thioesterase no 0.38
    4 HMPREF1078_RS01330 TIGR04076 family protein no 0.37
    5 HMPREF1078_RS19980 hypothetical protein no 0.36
    6 HMPREF1078_RS16600 AraC family transcriptional regulator no 0.36
    7 HMPREF1078_RS02370 transglycosylase SLT domain-containing protein no 0.35
    8 HMPREF1078_RS06450 L-fucose/L-arabinose isomerase family protein no 0.35
    9 HMPREF1078_RS01255 PL29 family lyase N-terminal domain-containing protein no 0.34
    10 HMPREF1078_RS03850 GDP-L-fucose synthase no 0.34
    11 HMPREF1078_RS07495 hypothetical protein no 0.33
    12 HMPREF1078_RS13260 ATP-binding protein no 0.33
    13 HMPREF1078_RS14260 RagB/SusD family nutrient uptake outer membrane protein no 0.33
    14 HMPREF1078_RS04600 carbon starvation protein A no 0.33
    15 HMPREF1078_RS14050 DUF1080 domain-containing protein no 0.32
    16 HMPREF1078_RS05785 glycoside hydrolase family 31 protein no 0.32
    17 HMPREF1078_RS01285 GNAT family N-acetyltransferase no 0.31
    18 HMPREF1078_RS10040 DsbA family protein no 0.31
    19 HMPREF1078_RS04185 DUF6383 domain-containing protein no 0.31
    20 HMPREF1078_RS06480 efflux RND transporter permease subunit no 0.31

    Or look for negative cofitness