Top cofit genes for HMPREF1078_RS04075 from Parabacteroides merdae CL09T00C40

DUF4974 domain-containing protein
SEED: putative anti-sigma factor

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HMPREF1078_RS17045		ATP-dependent Clp protease ATP-binding subunit ClpX	no	0.49
2	HMPREF1078_RS01505		oligosaccharide flippase family protein	no	0.49
3	HMPREF1078_RS15310		peptide MFS transporter	no	0.45
4	HMPREF1078_RS05310		6-bladed beta-propeller	no	0.43
5	HMPREF1078_RS16625		DUF6383 domain-containing protein	no	0.43
6	HMPREF1078_RS03065		hypothetical protein	no	0.43
7	HMPREF1078_RS06595		DUF362 domain-containing protein	no	0.43
8	HMPREF1078_RS17880		nucleotidyl transferase AbiEii/AbiGii toxin family protein	no	0.43
9	HMPREF1078_RS14210		phosphoribosylaminoimidazolesuccinocarboxamide synthase	no	0.42
10	HMPREF1078_RS14700		bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	no	0.42
11	HMPREF1078_RS14590		hypothetical protein	no	0.42
12	HMPREF1078_RS05870		PglZ domain-containing protein	no	0.41
13	HMPREF1078_RS19190		MBL fold metallo-hydrolase	no	0.41
14	HMPREF1078_RS13220		sugar phosphate isomerase/epimerase	no	0.40
15	HMPREF1078_RS04555		HAMP domain-containing sensor histidine kinase	no	0.40
16	HMPREF1078_RS00010		multidrug efflux RND transporter permease subunit	no	0.40
17	HMPREF1078_RS07540		sigma-54 dependent transcriptional regulator	no	0.40
18	HMPREF1078_RS15295		adenosylmethionine--8-amino-7-oxononanoate transaminase	no	0.40
19	HMPREF1078_RS02090		HAMP domain-containing sensor histidine kinase	no	0.39
20	HMPREF1078_RS15305		hypothetical protein	no	0.39

Or look for negative cofitness