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  • Top cofit genes for HMPREF1078_RS04055 from Parabacteroides merdae CL09T00C40

    DUF4466 family protein
    SEED: FIG01094176: hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS11295 regulatory protein RecX no 0.66
    2 HMPREF1078_RS10015 acyl-CoA carboxylase subunit beta no 0.66
    3 HMPREF1078_RS14240 thioredoxin domain-containing protein no 0.65
    4 HMPREF1078_RS10030 sodium ion-translocating decarboxylase subunit beta no 0.65
    5 HMPREF1078_RS05970 ABC transporter permease no 0.64
    6 HMPREF1078_RS10020 OadG family transporter subunit no 0.64
    7 HMPREF1078_RS10025 biotin/lipoyl-binding protein no 0.64
    8 HMPREF1078_RS05595 glycoside hydrolase family 95 protein no 0.61
    9 HMPREF1078_RS05975 HlyD family efflux transporter periplasmic adaptor subunit no 0.61
    10 HMPREF1078_RS02640 acyltransferase no 0.60
    11 HMPREF1078_RS17595 TonB-dependent receptor no 0.59
    12 HMPREF1078_RS11435 two-component regulator propeller domain-containing protein no 0.58
    13 HMPREF1078_RS06045 glycoside hydrolase family 2 TIM barrel-domain containing protein no 0.58
    14 HMPREF1078_RS13120 dihydrofolate reductase no 0.57
    15 HMPREF1078_RS19920 FtsX-like permease family protein no 0.57
    16 HMPREF1078_RS06395 glutamate decarboxylase no 0.57
    17 HMPREF1078_RS07250 VapE family protein no 0.56
    18 HMPREF1078_RS10185 S46 family peptidase no 0.56
    19 HMPREF1078_RS09760 hypothetical protein no 0.56
    20 HMPREF1078_RS15905 50S ribosomal protein L11 methyltransferase no 0.56

    Or look for negative cofitness