Top cofit genes for HMPREF1078_RS03395 from Parabacteroides merdae CL09T00C40

helix-turn-helix transcriptional regulator

Rank	Hit	Name	Description	Conserved?	Cofitness
1	HMPREF1078_RS02480		mechanosensitive ion channel	no	0.51
2	HMPREF1078_RS13595		glycoside hydrolase family 88 protein	no	0.45
3	HMPREF1078_RS12800		FKBP-type peptidyl-prolyl cis-trans isomerase	no	0.42
4	HMPREF1078_RS15680		NADH:flavin oxidoreductase	no	0.42
5	HMPREF1078_RS09115		PcfK-like family protein	no	0.41
6	HMPREF1078_RS09590		RagB/SusD family nutrient uptake outer membrane protein	no	0.41
7	HMPREF1078_RS02885		DUF1566 domain-containing protein	no	0.39
8	HMPREF1078_RS13755		DUF262 domain-containing protein	no	0.39
9	HMPREF1078_RS08975		ATP-binding protein	no	0.39
10	HMPREF1078_RS14990		RNA methyltransferase	no	0.39
11	HMPREF1078_RS16765		hypothetical protein	no	0.39
12	HMPREF1078_RS00770		RNA polymerase sigma-70 factor	no	0.39
13	HMPREF1078_RS09365		hypothetical protein	no	0.37
14	HMPREF1078_RS04360		sigma-70 family RNA polymerase sigma factor	no	0.37
15	HMPREF1078_RS07770		GH92 family glycosyl hydrolase	no	0.37
16	HMPREF1078_RS02030		malate dehydrogenase	no	0.37
17	HMPREF1078_RS00875		MATE family efflux transporter	no	0.36
18	HMPREF1078_RS16110		hypothetical protein	no	0.36
19	HMPREF1078_RS08735		signal peptidase I	no	0.36
20	HMPREF1078_RS09330		TraL conjugative transposon family protein	no	0.36

Or look for negative cofitness