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  • Top cofit genes for HMPREF1078_RS03325 from Parabacteroides merdae CL09T00C40

    DUF5045 domain-containing protein
    SEED: FIG00937099: hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS08045 L-serine ammonia-lyase, iron-sulfur-dependent, subunit alpha no 0.44
    2 HMPREF1078_RS03310 hypothetical protein no 0.44
    3 HMPREF1078_RS03800 helix-turn-helix domain-containing protein no 0.43
    4 HMPREF1078_RS05910 nucleoside kinase 0.55 0.43
    5 HMPREF1078_RS03480 thiamine phosphate synthase no 0.42
    6 HMPREF1078_RS05345 peptidase U32 family protein no 0.42
    7 HMPREF1078_RS04870 aminoacyl-histidine dipeptidase no 0.41
    8 HMPREF1078_RS10555 MutS family DNA mismatch repair protein no 0.41
    9 HMPREF1078_RS17400 chromate transporter no 0.41
    10 HMPREF1078_RS11395 RagB/SusD family nutrient uptake outer membrane protein no 0.40
    11 HMPREF1078_RS11405 sulfide/dihydroorotate dehydrogenase-like FAD/NAD-binding protein no 0.40
    12 HMPREF1078_RS13455 DsbA family protein no 0.39
    13 HMPREF1078_RS02325 Xaa-Pro aminopeptidase no 0.39
    14 HMPREF1078_RS01630 YjbH domain-containing protein no 0.39
    15 HMPREF1078_RS12000 hypothetical protein no 0.39
    16 HMPREF1078_RS13060 HDIG domain-containing protein no 0.39
    17 HMPREF1078_RS18495 hypothetical protein no 0.38
    18 HMPREF1078_RS12890 heavy metal-binding domain-containing protein no 0.38
    19 HMPREF1078_RS10320 NCS2 family permease no 0.38
    20 HMPREF1078_RS18205 DUF4373 domain-containing protein no 0.38

    Or look for negative cofitness