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  • Top cofit genes for HMPREF1078_RS03115 from Parabacteroides merdae CL09T00C40

    hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS03110 ATP-binding protein no 0.93
    2 HMPREF1078_RS05905 Na/Pi cotransporter family protein no 0.90
    3 HMPREF1078_RS13800 DEAD/DEAH box helicase family protein no 0.88
    4 HMPREF1078_RS13785 DUF87 domain-containing protein no 0.88
    5 HMPREF1078_RS13790 AAA family ATPase no 0.88
    6 HMPREF1078_RS08015 helix-turn-helix domain-containing protein no 0.88
    7 HMPREF1078_RS07665 NADP-dependent malic enzyme no 0.88
    8 HMPREF1078_RS13780 HAMP domain-containing histidine kinase no 0.86
    9 HMPREF1078_RS13775 response regulator no 0.86
    10 HMPREF1078_RS02385 recombinase family protein no 0.86
    11 HMPREF1078_RS13805 site-specific DNA-methyltransferase no 0.85
    12 HMPREF1078_RS04160 Mur ligase family protein no 0.82
    13 HMPREF1078_RS12260 prolyl oligopeptidase family serine peptidase no 0.80
    14 HMPREF1078_RS13090 C1 family peptidase no 0.79
    15 HMPREF1078_RS13810 helix-turn-helix transcriptional regulator no 0.78
    16 HMPREF1078_RS17200 glycoside hydrolase family 95 protein no 0.78
    17 HMPREF1078_RS12835 S41 family peptidase no 0.78
    18 HMPREF1078_RS14500 type III pantothenate kinase no 0.78
    19 HMPREF1078_RS13795 hypothetical protein no 0.76
    20 HMPREF1078_RS09890 cation:proton antiporter no 0.75

    Or look for negative cofitness