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  • Top cofit genes for HMPREF1078_RS03070 from Parabacteroides merdae CL09T00C40

    hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS03700 sigma-54 dependent transcriptional regulator no 0.62
    2 HMPREF1078_RS14990 RNA methyltransferase no 0.55
    3 HMPREF1078_RS02030 malate dehydrogenase no 0.54
    4 HMPREF1078_RS00305 family 20 glycosylhydrolase no 0.53
    5 HMPREF1078_RS04230 DUF6078 family protein no 0.53
    6 HMPREF1078_RS15045 HU family DNA-binding protein no 0.52
    7 HMPREF1078_RS13425 sugar phosphate isomerase/epimerase no 0.51
    8 HMPREF1078_RS06180 outer membrane beta-barrel protein no 0.51
    9 HMPREF1078_RS04500 cytochrome ubiquinol oxidase subunit I no 0.50
    10 HMPREF1078_RS07210 alanine dehydrogenase no 0.50
    11 HMPREF1078_RS13245 ATP-binding cassette domain-containing protein no 0.50
    12 HMPREF1078_RS11685 RagB/SusD family nutrient uptake outer membrane protein no 0.50
    13 HMPREF1078_RS09020 DUF4134 domain-containing protein no 0.50
    14 HMPREF1078_RS12715 oxaloacetate decarboxylase no 0.49
    15 HMPREF1078_RS07740 porin family protein no 0.49
    16 HMPREF1078_RS00680 glycoside hydrolase family 97 protein no 0.49
    17 HMPREF1078_RS12695 hypothetical protein no 0.49
    18 HMPREF1078_RS17700 HAMP domain-containing sensor histidine kinase no 0.49
    19 HMPREF1078_RS05805 RagB/SusD family nutrient uptake outer membrane protein no 0.48
    20 HMPREF1078_RS05115 helix-turn-helix domain-containing protein no 0.48

    Or look for negative cofitness