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Cofit
Protein
Homologs
Top cofit genes for HMPREF1078_RS03070 from
Parabacteroides merdae CL09T00C40
hypothetical protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HMPREF1078
_RS03700
sigma-54 dependent transcriptional regulator
no
0.62
2
HMPREF1078
_RS14990
RNA methyltransferase
no
0.55
3
HMPREF1078
_RS02030
malate dehydrogenase
no
0.54
4
HMPREF1078
_RS00305
family 20 glycosylhydrolase
no
0.53
5
HMPREF1078
_RS04230
DUF6078 family protein
no
0.53
6
HMPREF1078
_RS15045
HU family DNA-binding protein
no
0.52
7
HMPREF1078
_RS13425
sugar phosphate isomerase/epimerase
no
0.51
8
HMPREF1078
_RS06180
outer membrane beta-barrel protein
no
0.51
9
HMPREF1078
_RS04500
cytochrome ubiquinol oxidase subunit I
no
0.50
10
HMPREF1078
_RS07210
alanine dehydrogenase
no
0.50
11
HMPREF1078
_RS13245
ATP-binding cassette domain-containing protein
no
0.50
12
HMPREF1078
_RS11685
RagB/SusD family nutrient uptake outer membrane protein
no
0.50
13
HMPREF1078
_RS09020
DUF4134 domain-containing protein
no
0.50
14
HMPREF1078
_RS12715
oxaloacetate decarboxylase
no
0.49
15
HMPREF1078
_RS07740
porin family protein
no
0.49
16
HMPREF1078
_RS00680
glycoside hydrolase family 97 protein
no
0.49
17
HMPREF1078
_RS12695
hypothetical protein
no
0.49
18
HMPREF1078
_RS17700
HAMP domain-containing sensor histidine kinase
no
0.49
19
HMPREF1078
_RS05805
RagB/SusD family nutrient uptake outer membrane protein
no
0.48
20
HMPREF1078
_RS05115
helix-turn-helix domain-containing protein
no
0.48
Or look for
negative cofitness