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  • Top cofit genes for HMPREF1078_RS02680 from Parabacteroides merdae CL09T00C40

    hypothetical protein

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS08540 deoxyribonuclease IV no 0.38
    2 HMPREF1078_RS03520 AraC family transcriptional regulator no 0.36
    3 HMPREF1078_RS15385 site-specific integrase no 0.36
    4 HMPREF1078_RS17390 TolC family protein no 0.35
    5 HMPREF1078_RS09100 hypothetical protein no 0.35
    6 HMPREF1078_RS11030 elongation factor G no 0.35
    7 HMPREF1078_RS05450 hypothetical protein no 0.34
    8 HMPREF1078_RS19885 hypothetical protein no 0.34
    9 HMPREF1078_RS07775 twin-arginine translocase subunit TatC no 0.34
    10 HMPREF1078_RS10145 bifunctional nuclease family protein no 0.34
    11 HMPREF1078_RS01150 IS1182 family transposase no 0.34
    12 HMPREF1078_RS16095 DUF3256 family protein no 0.33
    13 HMPREF1078_RS10210 ABC transporter permease no 0.33
    14 HMPREF1078_RS03930 PIG-L family deacetylase no 0.32
    15 HMPREF1078_RS03085 phage integrase SAM-like domain-containing protein no 0.32
    16 HMPREF1078_RS00815 DUF4827 family protein no 0.32
    17 HMPREF1078_RS08545 PaaI family thioesterase no 0.32
    18 HMPREF1078_RS11735 hypothetical protein no 0.32
    19 HMPREF1078_RS03955 nitroreductase family protein no 0.31
    20 HMPREF1078_RS03865 hypothetical protein no 0.31

    Or look for negative cofitness