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  • Top cofit genes for HMPREF1078_RS01375 from Parabacteroides merdae CL09T00C40

    Xaa-Pro peptidase family protein
    SEED: Xaa-Pro aminopeptidase (EC 3.4.11.9)

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS07070 ATP-dependent 6-phosphofructokinase no 0.53
    2 HMPREF1078_RS06350 DUF1080 domain-containing protein no 0.53
    3 HMPREF1078_RS07200 viroplasmin family protein no 0.51
    4 HMPREF1078_RS13235 tRNA-Thr no 0.49
    5 HMPREF1078_RS04440 AAA family ATPase no 0.48
    6 HMPREF1078_RS03115 hypothetical protein no 0.48
    7 HMPREF1078_RS13190 RluA family pseudouridine synthase no 0.47
    8 HMPREF1078_RS11750 hypothetical protein no 0.46
    9 HMPREF1078_RS12605 BamA/TamA family outer membrane protein no 0.45
    10 HMPREF1078_RS12040 fimbrial protein no 0.45
    11 HMPREF1078_RS03235 hypothetical protein no 0.44
    12 HMPREF1078_RS05825 hypothetical protein no 0.44
    13 HMPREF1078_RS04435 ParB/RepB/Spo0J family partition protein no 0.44
    14 HMPREF1078_RS05065 DMT family transporter no 0.44
    15 HMPREF1078_RS05905 Na/Pi cotransporter family protein no 0.43
    16 HMPREF1078_RS11745 reverse transcriptase/maturase family protein no 0.43
    17 HMPREF1078_RS06690 RagB/SusD family nutrient uptake outer membrane protein no 0.43
    18 HMPREF1078_RS12600 translocation/assembly module TamB domain-containing protein no 0.42
    19 HMPREF1078_RS12835 S41 family peptidase no 0.41
    20 HMPREF1078_RS12260 prolyl oligopeptidase family serine peptidase no 0.41

    Or look for negative cofitness