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  • Top cofit genes for HMPREF1078_RS00720 from Parabacteroides merdae CL09T00C40

    LysR family transcriptional regulator
    SEED: LysR family transcriptional regulator YeiE

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS03600 hypothetical protein no 0.61
    2 HMPREF1078_RS00750 radical SAM protein no 0.49
    3 HMPREF1078_RS15005 biosynthetic arginine decarboxylase no 0.47
    4 HMPREF1078_RS05440 SGNH/GDSL hydrolase family protein no 0.47
    5 HMPREF1078_RS01805 carboxynorspermidine decarboxylase 0.81 0.46
    6 HMPREF1078_RS14635 5-formyltetrahydrofolate cyclo-ligase no 0.46
    7 HMPREF1078_RS01675 2-hydroxyacid dehydrogenase no 0.45
    8 HMPREF1078_RS06760 TatD family hydrolase no 0.44
    9 HMPREF1078_RS08545 PaaI family thioesterase no 0.44
    10 HMPREF1078_RS15385 site-specific integrase 0.64 0.44
    11 HMPREF1078_RS06500 hypothetical protein no 0.44
    12 HMPREF1078_RS18410 chromosome partitioning protein ParB no 0.43
    13 HMPREF1078_RS01025 DUF3857 domain-containing protein no 0.43
    14 HMPREF1078_RS01215 hypothetical protein no 0.43
    15 HMPREF1078_RS02875 recombination protein NinG no 0.43
    16 HMPREF1078_RS01050 glycoside hydrolase family 31 protein no 0.42
    17 HMPREF1078_RS10330 M13 family metallopeptidase no 0.42
    18 HMPREF1078_RS13925 DMT family protein no 0.42
    19 HMPREF1078_RS06735 Gfo/Idh/MocA family oxidoreductase no 0.42
    20 HMPREF1078_RS03985 UpxY family transcription antiterminator no 0.40

    Or look for negative cofitness