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  • Top cofit genes for HMPREF1078_RS00415 from Parabacteroides merdae CL09T00C40

    sugar phosphate isomerase/epimerase
    SEED: sugar phosphate isomerase/epimerase

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1078_RS04760 GH92 family glycosyl hydrolase no 0.51
    2 HMPREF1078_RS06315 D-aminoacyl-tRNA deacylase no 0.44
    3 HMPREF1078_RS01310 lactate utilization protein B no 0.43
    4 HMPREF1078_RS08985 conjugal transfer protein MobC no 0.42
    5 HMPREF1078_RS10355 peptidylprolyl isomerase no 0.41
    6 HMPREF1078_RS02020 RidA family protein no 0.41
    7 HMPREF1078_RS19570 hypothetical protein no 0.39
    8 HMPREF1078_RS05530 WbqC family protein no 0.39
    9 HMPREF1078_RS11860 family 20 glycosylhydrolase no 0.38
    10 HMPREF1078_RS15985 Wzz/FepE/Etk N-terminal domain-containing protein 0.34 0.38
    11 HMPREF1078_RS04770 MmcQ/YjbR family DNA-binding protein no 0.38
    12 HMPREF1078_RS19770 hypothetical protein no 0.38
    13 HMPREF1078_RS00675 SGNH/GDSL hydrolase family protein no 0.37
    14 HMPREF1078_RS16630 mechanosensitive ion channel no 0.37
    15 HMPREF1078_RS14150 FecR family protein no 0.36
    16 HMPREF1078_RS10325 DUF5020 family protein no 0.36
    17 HMPREF1078_RS14410 ABC transporter permease no 0.36
    18 HMPREF1078_RS12615 ornithine--oxo-acid transaminase no 0.36
    19 HMPREF1078_RS12680 DUF1573 domain-containing protein no 0.36
    20 HMPREF1078_RS01290 hypothetical protein no 0.35

    Or look for negative cofitness