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Cofit
Protein
Homologs
Top cofit genes for HMPREF1058_RS13510 from
Phocaeicola vulgatus CL09T03C04
AAA family ATPase
SEED: DNA helicase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
HMPREF1058
_RS09990
5'-methylthioadenosine/adenosylhomocysteine nucleosidase
no
0.46
2
HMPREF1058
_RS07605
radical SAM protein
no
0.44
3
HMPREF1058
_RS15965
recombinase RecA
0.37
0.42
4
HMPREF1058
_RS01735
excinuclease ABC subunit UvrA
no
0.40
5
HMPREF1058
_RS08895
right-handed parallel beta-helix repeat-containing protein
no
0.40
6
HMPREF1058
_RS10160
hypothetical protein
no
0.40
7
HMPREF1058
_RS00315
NAAT family transporter
no
0.40
8
HMPREF1058
_RS07980
excinuclease ABC subunit UvrA
0.25
0.39
9
HMPREF1058
_RS01765
excinuclease ABC subunit UvrB
no
0.39
10
HMPREF1058
_RS14585
DNA helicase RecQ
no
0.39
11
HMPREF1058
_RS14840
aminopeptidase
no
0.39
12
HMPREF1058
_RS16040
AAA family ATPase
no
0.38
13
HMPREF1058
_RS00595
Holliday junction branch migration protein RuvA
0.48
0.37
14
HMPREF1058
_RS14395
HAD family hydrolase
no
0.37
15
HMPREF1058
_RS02155
ParB-like nuclease domain-containing protein
no
0.37
16
HMPREF1058
_RS01645
RNA methyltransferase
no
0.37
17
HMPREF1058
_RS09440
ribosome-associated translation inhibitor RaiA
no
0.37
18
HMPREF1058
_RS01260
SPOR domain-containing protein
no
0.37
19
HMPREF1058
_RS02150
DUF3440 domain-containing protein
no
0.36
20
HMPREF1058
_RS08070
alpha-L-fucosidase
no
0.36
Or look for
negative cofitness