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  • Top cofit genes for HMPREF1058_RS13510 from Phocaeicola vulgatus CL09T03C04

    AAA family ATPase
    SEED: DNA helicase

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1058_RS09990 5'-methylthioadenosine/adenosylhomocysteine nucleosidase no 0.46
    2 HMPREF1058_RS07605 radical SAM protein no 0.44
    3 HMPREF1058_RS15965 recombinase RecA 0.37 0.42
    4 HMPREF1058_RS01735 excinuclease ABC subunit UvrA no 0.40
    5 HMPREF1058_RS08895 right-handed parallel beta-helix repeat-containing protein no 0.40
    6 HMPREF1058_RS10160 hypothetical protein no 0.40
    7 HMPREF1058_RS00315 NAAT family transporter no 0.40
    8 HMPREF1058_RS07980 excinuclease ABC subunit UvrA 0.25 0.39
    9 HMPREF1058_RS01765 excinuclease ABC subunit UvrB no 0.39
    10 HMPREF1058_RS14585 DNA helicase RecQ no 0.39
    11 HMPREF1058_RS14840 aminopeptidase no 0.39
    12 HMPREF1058_RS16040 AAA family ATPase no 0.38
    13 HMPREF1058_RS00595 Holliday junction branch migration protein RuvA 0.48 0.37
    14 HMPREF1058_RS14395 HAD family hydrolase no 0.37
    15 HMPREF1058_RS02155 ParB-like nuclease domain-containing protein no 0.37
    16 HMPREF1058_RS01645 RNA methyltransferase no 0.37
    17 HMPREF1058_RS09440 ribosome-associated translation inhibitor RaiA no 0.37
    18 HMPREF1058_RS01260 SPOR domain-containing protein no 0.37
    19 HMPREF1058_RS02150 DUF3440 domain-containing protein no 0.36
    20 HMPREF1058_RS08070 alpha-L-fucosidase no 0.36

    Or look for negative cofitness