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  • Top cofit genes for HMPREF1058_RS03380 from Phocaeicola vulgatus CL09T03C04

    DegT/DnrJ/EryC1/StrS family aminotransferase
    SEED: Aminotransferase, DegT/DnrJ/EryC1/StrS family

    Rank Hit Name Description Conserved? Cofitness  
    1 HMPREF1058_RS03410 hypothetical protein no 0.40
    2 HMPREF1058_RS12165 radical SAM protein no 0.37
    3 HMPREF1058_RS13690 DUF5074 domain-containing protein no 0.36
    4 HMPREF1058_RS15820 glycosyltransferase no 0.36
    5 HMPREF1058_RS07775 hypothetical protein no 0.36
    6 HMPREF1058_RS18440 hypothetical protein no 0.35
    7 HMPREF1058_RS13110 EpsG family protein no 0.34
    8 HMPREF1058_RS15105 glycoside hydrolase family 97 protein no 0.33
    9 HMPREF1058_RS03420 O-antigen ligase family protein no 0.32
    10 HMPREF1058_RS0119535 glycosyltransferase family 2 protein no 0.32
    11 HMPREF1058_RS12035 phosphate butyryltransferase no 0.31
    12 HMPREF1058_RS06285 hypothetical protein no 0.31
    13 HMPREF1058_RS10690 AMP-binding protein no 0.31
    14 HMPREF1058_RS06765 glycosyltransferase family 1 protein no 0.31
    15 HMPREF1058_RS14430 RagB/SusD family nutrient uptake outer membrane protein 0.35 0.30
    16 HMPREF1058_RS02775 response regulator no 0.30
    17 HMPREF1058_RS09145 TonB-dependent receptor no 0.30
    18 HMPREF1058_RS20210 glycosyltransferase no 0.30
    19 HMPREF1058_RS02780 sigma-54-dependent Fis family transcriptional regulator 0.78 0.30
    20 HMPREF1058_RS20240 DUF4422 domain-containing protein no 0.30

    Or look for negative cofitness