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  • Top cofit genes for Psest_1016 from Pseudomonas stutzeri RCH2

    putative TIM-barrel protein, nifR3 family
    SEED: tRNA dihydrouridine synthase B (EC 1.-.-.-)
    KEGG: tRNA-dihydrouridine synthase B

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_1627 Superfamily II DNA and RNA helicases 0.33 0.34
    2 Psest_1097 hypothetical protein no 0.32
    3 Psest_0702 Methyl-accepting chemotaxis protein no 0.31
    4 Psest_3190 pyruvate kinase 0.75 0.28
    5 Psest_2949 Aspartyl aminopeptidase 0.61 0.28
    6 Psest_0692 rRNA methylase, putative, group 3 0.68 0.28
    7 Psest_4141 3-carboxymuconate cyclase no 0.26
    8 Psest_0298 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain 0.28 0.26
    9 Psest_0106 malonate decarboxylase, gamma subunit no 0.26
    10 Psest_0655 Chemotaxis signal transduction protein 0.32 0.26
    11 Psest_0728 hydrolase, TatD family 0.75 0.26
    12 Psest_0032 D-alanyl-D-alanine carboxypeptidase 0.71 0.26
    13 Psest_1188 FOG: EAL domain no 0.25
    14 Psest_3391 Uncharacterized protein conserved in bacteria no 0.25
    15 Psest_0756 alkylhydroperoxidase AhpD family core domain no 0.25
    16 Psest_3020 Cell wall-associated hydrolases (invasion-associated proteins) 0.49 0.25
    17 Psest_3658 spermidine/putrescine ABC transporter ATP-binding subunit 0.68 0.24
    18 Psest_0853 6-phosphogluconolactonase no 0.24
    19 Psest_3442 Beta-lactamase class A no 0.24
    20 Psest_1882 Signal transduction histidine kinase 0.20 0.24

    Or look for negative cofitness