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Cofit
Protein
Homologs
Top cofit genes for Psest_0418 from
Pseudomonas stutzeri RCH2
diguanylate cyclase (GGDEF) domain
SEED: GGDEF domain protein
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Psest
_1700
Transcriptional regulator
0.34
0.78
2
Psest
_2645
Transcriptional regulator
0.30
0.67
3
Psest
_0636
Predicted soluble lytic transglycosylase fused to an ABC-type amino acid-binding protein
no
0.37
4
Psest
_1569
PAS domain S-box/diguanylate cyclase (GGDEF) domain
no
0.37
5
Psest
_2029
Putative arginyl-tRNA:protein arginylyltransferase
no
0.36
6
Psest
_0350
Predicted signal-transduction protein containing cAMP-binding and CBS domains
0.63
0.35
7
Psest
_3970
Transcriptional regulator
no
0.35
8
Psest
_2024
isocitrate dehydrogenase, NADP-dependent, prokaryotic type
no
0.33
9
Psest
_4140
Acyl-CoA dehydrogenases
no
0.32
10
Psest
_2026
Uncharacterized conserved protein
no
0.32
11
Psest
_2461
tRNA 2-selenouridine synthase
0.47
0.30
12
Psest
_0541
succinate CoA transferases
no
0.29
13
Psest
_2651
DNA topoisomerase I, bacterial
no
0.27
14
Psest
_1187
exodeoxyribonuclease III
no
0.26
15
Psest
_2720
Enoyl-CoA hydratase/carnithine racemase
0.26
0.26
16
Psest
_4229
Transcriptional regulator
no
0.26
17
Psest
_4139
PAS domain S-box
no
0.26
18
Psest
_2806
RNA polymerase sigma factor RpoS
0.30
0.26
19
Psest
_0142
Micrococcal nuclease (thermonuclease) homologs
no
0.26
20
Psest
_0912
Tellurite resistance protein TerB.
no
0.25
Or look for
negative cofitness