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  • Top cofit genes for Psest_0408 from Pseudomonas stutzeri RCH2

    Protein involved in catabolism of external DNA
    SEED: Protein involved in catabolism of external DNA

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_3472 Long-chain acyl-CoA synthetases (AMP-forming) 0.45 0.43
    2 Psest_3966 Predicted thioesterase 0.26 0.41
    3 Psest_0056 Glutathione S-transferase 0.70 0.39
    4 Psest_3734 Uncharacterized protein involved in an early stage of isoprenoid biosynthesis 0.33 0.38
    5 Psest_0994 L-aspartate-alpha-decarboxylase 0.39 0.38
    6 Psest_0341 flavoprotein, HI0933 family 0.43 0.37
    7 Psest_3975 Signal transduction histidine kinase no 0.36
    8 Psest_2924 Short-chain alcohol dehydrogenase of unknown specificity no 0.36
    9 Psest_0539 Acyl-CoA dehydrogenases no 0.35
    10 Psest_3974 Anti-sigma regulatory factor (Ser/Thr protein kinase) no 0.35
    11 Psest_2763 Cellobiose phosphorylase no 0.35
    12 Psest_3695 Histidine ammonia-lyase 0.23 0.34
    13 Psest_3976 PAS domain S-box no 0.34
    14 Psest_2702 PAS domain S-box 0.19 0.33
    15 Psest_0546 hypothetical protein no 0.32
    16 Psest_4133 RNA polymerase sigma factor, sigma-70 family no 0.32
    17 Psest_0335 Methylase involved in ubiquinone/menaquinone biosynthesis no 0.32
    18 Psest_3235 Protein of unknown function (DUF1329). 0.49 0.32
    19 Psest_3525 Formamidopyrimidine-DNA glycosylase no 0.32
    20 Psest_2222 ribose-phosphate pyrophosphokinase no 0.32

    Or look for negative cofitness