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Cofit
Protein
Homologs
Top cofit genes for Psest_4141 from
Pseudomonas stutzeri RCH2
3-carboxymuconate cyclase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Psest
_0327
Transcriptional regulator
0.25
0.37
2
Psest
_3963
PAS domain S-box
no
0.36
3
Psest
_2353
Predicted oxidoreductases (related to aryl-alcohol dehydrogenases)
no
0.36
4
Psest
_0034
Outer membrane receptor proteins, mostly Fe transport
no
0.35
5
Psest
_3694
Predicted acyltransferase
no
0.34
6
Psest
_1037
acetolactate synthase, small subunit
0.57
0.34
7
Psest
_1704
Dehydrogenases (flavoproteins)
no
0.34
8
Psest
_0380
TonB-dependent siderophore receptor
no
0.33
9
Psest
_1006
dTDP-4-dehydrorhamnose reductase
no
0.33
10
Psest
_0325
Putative threonine efflux protein
no
0.33
11
Psest
_3213
acetate kinase
no
0.33
12
Psest
_1055
Saccharopine dehydrogenase and related proteins
0.38
0.32
13
Psest
_1948
Ribosome modulation factor
no
0.32
14
Psest
_0024
LysM domain.
no
0.32
15
Psest
_2027
ATP-dependent Clp protease ATP-binding subunit clpA
0.26
0.32
16
Psest
_1054
Diaminopimelate decarboxylase
no
0.31
17
Psest
_3010
cobalamin biosynthesis protein CobD
0.26
0.31
18
Psest
_3818
endoribonuclease L-PSP, putative
0.61
0.30
19
Psest
_0313
5,10-methylenetetrahydrofolate reductase, prokaryotic form
0.64
0.30
20
Psest
_4302
hypothetical protein
no
0.30
Or look for
negative cofitness