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  • Top cofit genes for Psest_4098 from Pseudomonas stutzeri RCH2

    Superfamily I DNA and RNA helicases
    SEED: ATP-dependent DNA helicase UvrD/PcrA
    KEGG: DNA helicase II / ATP-dependent DNA helicase PcrA

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_2285 ATP-dependent protease La 0.74 0.34
    2 Psest_2259 excinuclease ABC, C subunit 0.90 0.33
    3 Psest_0310 The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family 0.67 0.32
    4 Psest_1296 excinuclease ABC, B subunit 0.93 0.32
    5 Psest_3576 excinuclease ABC, A subunit 0.95 0.32
    6 Psest_1725 Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain no 0.29
    7 Psest_3217 PAS domain S-box no 0.29
    8 Psest_3401 DNA repair protein RadA 0.91 0.28
    9 Psest_1653 transcription-repair coupling factor (mfd) 0.87 0.28
    10 Psest_0962 DNA repair protein RecN 0.92 0.28
    11 Psest_3216 diguanylate cyclase (GGDEF) domain no 0.27
    12 Psest_0446 hypothetical protein no 0.27
    13 Psest_2555 hypothetical protein no 0.26
    14 Psest_0956 Transcriptional regulators no 0.25
    15 Psest_1869 ATP-dependent DNA helicase RecQ 0.69 0.25
    16 Psest_0004 recF protein 0.86 0.25
    17 Psest_3100 RNA polymerase sigma factor RpoE 0.60 0.25
    18 Psest_0192 Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains no 0.24
    19 Psest_3975 Signal transduction histidine kinase no 0.24
    20 Psest_0247 NAD-dependent aldehyde dehydrogenases no 0.24

    Or look for negative cofitness