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  • Top cofit genes for Psest_0004 from Pseudomonas stutzeri RCH2

    recF protein
    SEED: DNA recombination and repair protein RecF
    KEGG: DNA replication and repair protein RecF

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_3090 DNA repair protein RecO 0.97 0.88
    2 Psest_2259 excinuclease ABC, C subunit 0.93 0.87
    3 Psest_3576 excinuclease ABC, A subunit 0.90 0.85
    4 Psest_1296 excinuclease ABC, B subunit 0.94 0.81
    5 Psest_2545 recombination protein RecR 0.95 0.75
    6 Psest_0962 DNA repair protein RecN 0.83 0.74
    7 Psest_2236 Rad3-related DNA helicases 0.54 0.61
    8 Psest_1869 ATP-dependent DNA helicase RecQ 0.82 0.61
    9 Psest_3401 DNA repair protein RadA 0.83 0.59
    10 Psest_2235 DNA damage response nuclease (from data) 0.64 0.57
    11 Psest_1653 transcription-repair coupling factor (mfd) 0.81 0.55
    12 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.87 0.43
    13 Psest_1525 Uncharacterized protein conserved in bacteria 0.47 0.38
    14 Psest_1519 DNA polymerase elongation subunit (family B) 0.81 0.37
    15 Psest_2872 protein RecA 0.90 0.34
    16 Psest_4219 DNA polymerase I 0.82 0.31
    17 Psest_3767 tyrosine recombinase XerC 0.71 0.30
    18 Psest_1492 DNA-binding ferritin-like protein (oxidative damage protectant) 0.65 0.29
    19 Psest_2857 Rad3-related DNA helicases 0.64 0.26
    20 Psest_1978 DNA-directed DNA polymerase III (polc) 0.78 0.25

    Or look for negative cofitness