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  • Top cofit genes for Psest_3776 from Pseudomonas stutzeri RCH2

    choline/carnitine/betaine transport
    SEED: High-affinity choline uptake protein BetT
    KEGG: high-affinity choline transport protein

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_2673 Arabinose efflux permease no 0.45
    2 Psest_2672 Predicted membrane protein no 0.37
    3 Psest_3451 tRNA (uracil-5-)-methyltransferase 0.49 0.35
    4 Psest_2070 FOG: LysM repeat no 0.33
    5 Psest_2636 tryptophan synthase, beta subunit no 0.30
    6 Psest_1871 Predicted esterase of the alpha-beta hydrolase superfamily 0.29 0.29
    7 Psest_0168 Uncharacterized conserved protein no 0.29
    8 Psest_1031 Uncharacterized protein conserved in bacteria no 0.28
    9 Psest_1241 S-adenosylmethionine:tRNA ribosyltransferase-isomerase 0.22 0.26
    10 Psest_0691 ribonuclease R no 0.26
    11 Psest_2132 Outer membrane protein 0.30 0.25
    12 Psest_4048 Type I restriction-modification system methyltransferase subunit no 0.25
    13 Psest_0958 Oligoketide cyclase/lipid transport protein 0.28 0.24
    14 Psest_3504 Predicted acyltransferases no 0.24
    15 Psest_2635 choline/carnitine/betaine transport 0.69 0.24
    16 Psest_2029 Putative arginyl-tRNA:protein arginylyltransferase 0.70 0.23
    17 Psest_1484 Thiol-disulfide isomerase and thioredoxins 0.25 0.23
    18 Psest_3344 ABC-type Co2+ transport system, periplasmic component no 0.23
    19 Psest_4047 Restriction endonuclease S subunits no 0.22
    20 Psest_2133 Uncharacterized protein conserved in bacteria 0.30 0.22

    Or look for negative cofitness