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Cofit
Protein
Homologs
Top cofit genes for Psest_3705 from
Pseudomonas stutzeri RCH2
hypothetical protein
SEED: Excinuclease ATPase subunit
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Psest
_4237
succinate-semialdehyde dehydrogenase
no
0.26
2
Psest
_0380
TonB-dependent siderophore receptor
no
0.22
3
Psest
_3901
diguanylate cyclase (GGDEF) domain
no
0.22
4
Psest
_0651
PAS domain S-box/diguanylate cyclase (GGDEF) domain
no
0.21
5
Psest
_0387
Membrane-bound serine protease (ClpP class)
no
0.21
6
Psest
_2480
Methyl-accepting chemotaxis protein
no
0.21
7
Psest
_0211
hypothetical protein
no
0.21
8
Psest
_0859
Maltoporin (phage lambda and maltose receptor)
no
0.20
9
Psest
_2779
Methyl-accepting chemotaxis protein
no
0.20
10
Psest
_1422
Carbohydrate-selective porin
no
0.20
11
Psest
_4151
Flagellar hook capping protein
no
0.19
12
Psest
_1844
Soluble lytic murein transglycosylase and related regulatory proteins (some contain LysM/invasin domains)
0.30
0.19
13
Psest
_0762
Glucose/sorbosone dehydrogenases
no
0.19
14
Psest
_0201
PAS domain S-box
no
0.19
15
Psest
_0860
Glycosidases
no
0.19
16
Psest
_4302
hypothetical protein
no
0.19
17
Psest
_0360
Predicted permease, DMT superfamily
no
0.18
18
Psest
_0403
lycopene cyclase
no
0.18
19
Psest
_4105
formate dehydrogenase, beta subunit, Fe-S containing
no
0.18
20
Psest
_1413
gamma-glutamyltranspeptidase
no
0.18
Or look for
negative cofitness