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  • Top cofit genes for Psest_3210 from Pseudomonas stutzeri RCH2

    Transcriptional regulator

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_3401 DNA repair protein RadA no 0.30
    2 Psest_1492 DNA-binding ferritin-like protein (oxidative damage protectant) 0.24 0.26
    3 Psest_3090 DNA repair protein RecO no 0.25
    4 Psest_1653 transcription-repair coupling factor (mfd) no 0.25
    5 Psest_0956 Transcriptional regulators 0.17 0.25
    6 Psest_0962 DNA repair protein RecN 0.54 0.25
    7 Psest_2727 Small-conductance mechanosensitive channel no 0.24
    8 Psest_0004 recF protein 0.35 0.24
    9 Psest_1869 ATP-dependent DNA helicase RecQ no 0.23
    10 Psest_2259 excinuclease ABC, C subunit no 0.23
    11 Psest_4219 DNA polymerase I no 0.22
    12 Psest_1229 Di- and tricarboxylate transporters no 0.22
    13 Psest_1091 ABC-type branched-chain amino acid transport systems, periplasmic component no 0.22
    14 Psest_2545 recombination protein RecR 0.26 0.21
    15 Psest_3576 excinuclease ABC, A subunit no 0.21
    16 Psest_2235 DNA damage response nuclease (from data) no 0.21
    17 Psest_1327 Superfamily II DNA/RNA helicases, SNF2 family 0.18 0.20
    18 Psest_1339 ATP-dependent helicase HrpA 0.44 0.20
    19 Psest_1496 Holliday junction DNA helicase, RuvA subunit 0.72 0.20
    20 Psest_1483 hypothetical protein no 0.20

    Or look for negative cofitness