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Cofit
Protein
Homologs
Top cofit genes for Psest_3210 from
Pseudomonas stutzeri RCH2
Transcriptional regulator
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Psest
_3401
DNA repair protein RadA
no
0.30
2
Psest
_1492
DNA-binding ferritin-like protein (oxidative damage protectant)
0.24
0.26
3
Psest
_3090
DNA repair protein RecO
no
0.25
4
Psest
_1653
transcription-repair coupling factor (mfd)
no
0.25
5
Psest
_0956
Transcriptional regulators
0.17
0.25
6
Psest
_0962
DNA repair protein RecN
0.54
0.25
7
Psest
_2727
Small-conductance mechanosensitive channel
no
0.24
8
Psest
_0004
recF protein
0.35
0.24
9
Psest
_1869
ATP-dependent DNA helicase RecQ
no
0.23
10
Psest
_2259
excinuclease ABC, C subunit
no
0.23
11
Psest
_4219
DNA polymerase I
no
0.22
12
Psest
_1229
Di- and tricarboxylate transporters
no
0.22
13
Psest
_1091
ABC-type branched-chain amino acid transport systems, periplasmic component
no
0.22
14
Psest
_2545
recombination protein RecR
0.26
0.21
15
Psest
_3576
excinuclease ABC, A subunit
no
0.21
16
Psest
_2235
DNA damage response nuclease
(from data)
no
0.21
17
Psest
_1327
Superfamily II DNA/RNA helicases, SNF2 family
0.18
0.20
18
Psest
_1339
ATP-dependent helicase HrpA
0.44
0.20
19
Psest
_1496
Holliday junction DNA helicase, RuvA subunit
0.72
0.20
20
Psest
_1483
hypothetical protein
no
0.20
Or look for
negative cofitness