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  • Top cofit genes for Psest_3090 from Pseudomonas stutzeri RCH2

    DNA repair protein RecO
    SEED: DNA recombination and repair protein RecO
    KEGG: DNA repair protein RecO (recombination protein O)

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_0004 recF protein 0.97 0.88
    2 Psest_2259 excinuclease ABC, C subunit 0.89 0.87
    3 Psest_3576 excinuclease ABC, A subunit 0.95 0.85
    4 Psest_1296 excinuclease ABC, B subunit 0.87 0.82
    5 Psest_0962 DNA repair protein RecN 0.93 0.75
    6 Psest_2545 recombination protein RecR 0.96 0.75
    7 Psest_2236 Rad3-related DNA helicases 0.44 0.66
    8 Psest_2235 DNA damage response nuclease (from data) 0.70 0.63
    9 Psest_1869 ATP-dependent DNA helicase RecQ 0.78 0.61
    10 Psest_1653 transcription-repair coupling factor (mfd) 0.96 0.61
    11 Psest_3401 DNA repair protein RadA 0.80 0.61
    12 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.75 0.48
    13 Psest_1525 Uncharacterized protein conserved in bacteria 0.30 0.38
    14 Psest_4219 DNA polymerase I 0.81 0.35
    15 Psest_1519 DNA polymerase elongation subunit (family B) 0.68 0.33
    16 Psest_2872 protein RecA 0.85 0.32
    17 Psest_3767 tyrosine recombinase XerC 0.62 0.32
    18 Psest_1492 DNA-binding ferritin-like protein (oxidative damage protectant) 0.50 0.31
    19 Psest_2857 Rad3-related DNA helicases 0.67 0.30
    20 Psest_1126 Uncharacterized protein conserved in bacteria 0.27 0.28

    Or look for negative cofitness