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  • Top cofit genes for Psest_0288 from Pseudomonas stutzeri RCH2

    putative DNA modification/repair radical SAM protein
    SEED: Radical SAM domain protein

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_0897 VRR-NUC domain. no 0.31
    2 Psest_1340 rarD protein no 0.28
    3 Psest_1818 GDP-mannose 4,6-dehydratase 0.73 0.27
    4 Psest_1222 Nucleoid-associated protein 0.29 0.26
    5 Psest_0913 Protein of unknown function (DUF2791). no 0.26
    6 Psest_3969 3-hydroxyacyl-CoA dehydrogenase no 0.25
    7 Psest_1823 Nucleoside-diphosphate-sugar epimerases 0.68 0.25
    8 Psest_0903 luciferase-type oxidoreductase, BA3436 family no 0.25
    9 Psest_1399 ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components no 0.24
    10 Psest_0393 Methylase of chemotaxis methyl-accepting proteins no 0.24
    11 Psest_1575 Beta-glucosidase-related glycosidases 0.16 0.24
    12 Psest_2882 hypothetical protein no 0.24
    13 Psest_0441 Subtilisin-like serine proteases no 0.24
    14 Psest_3967 Alcohol dehydrogenase, class IV 0.22 0.24
    15 Psest_1358 Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase and related deacylases no 0.24
    16 Psest_1393 AraC-type DNA-binding domain-containing proteins no 0.23
    17 Psest_0342 ABC-type amino acid transport/signal transduction systems, periplasmic component/domain no 0.23
    18 Psest_4162 Flagellar hook-length control protein no 0.23
    19 Psest_3154 hypothetical protein no 0.23
    20 Psest_0480 Uncharacterized protein conserved in bacteria no 0.23

    Or look for negative cofitness