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  • Top cofit genes for Psest_0286 from Pseudomonas stutzeri RCH2

    pilus retraction protein PilT
    SEED: Twitching motility protein PilT
    KEGG: twitching motility protein PilU

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_3963 PAS domain S-box 0.58 0.35
    2 Psest_3660 PAS domain S-box no 0.31
    3 Psest_0039 phosphoglucomutase, alpha-D-glucose phosphate-specific 0.40 0.29
    4 Psest_1746 Flagellar motor protein 0.65 0.29
    5 Psest_0319 Predicted ferric reductase no 0.29
    6 Psest_1744 Chemotaxis response regulator containing a CheY-like receiver domain and a methylesterase domain 0.75 0.28
    7 Psest_3524 ribose-phosphate pyrophosphokinase no 0.28
    8 Psest_3975 Signal transduction histidine kinase no 0.27
    9 Psest_2890 diguanylate cyclase (GGDEF) domain 0.28 0.27
    10 Psest_3100 RNA polymerase sigma factor RpoE 0.18 0.27
    11 Psest_2516 cytochrome c oxidase, subunit I no 0.27
    12 Psest_0318 NAD-dependent DNA ligase (contains BRCT domain type II) no 0.26
    13 Psest_2889 Predicted flavoprotein involved in K+ transport no 0.26
    14 Psest_1561 Uncharacterized conserved protein 0.31 0.26
    15 Psest_1742 Chemotaxis protein 0.77 0.26
    16 Psest_0730 O-6-methylguanine DNA methyltransferase 0.30 0.26
    17 Psest_4163 hypothetical protein no 0.26
    18 Psest_3229 Methyl-accepting chemotaxis protein no 0.26
    19 Psest_3971 Anti-anti-sigma regulatory factor (antagonist of anti-sigma factor) no 0.26
    20 Psest_1135 Protein of unknown function (DUF3182). no 0.25

    Or look for negative cofitness