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Cofit
Protein
Homologs
Top cofit genes for Psest_2890 from
Pseudomonas stutzeri RCH2
diguanylate cyclase (GGDEF) domain
SEED: diguanylate cyclase
Rank
Hit
Name
Description
Conserved?
Cofitness
1
Psest
_2889
Predicted flavoprotein involved in K+ transport
no
0.56
2
Psest
_1575
Beta-glucosidase-related glycosidases
no
0.46
3
Psest
_2169
malto-oligosyltrehalose synthase
no
0.46
4
Psest
_2666
Predicted acyl-CoA transferases/carnitine dehydratase
no
0.44
5
Psest
_2914
membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family
no
0.44
6
Psest
_0318
NAD-dependent DNA ligase (contains BRCT domain type II)
0.48
0.43
7
Psest
_0056
Glutathione S-transferase
no
0.42
8
Psest
_2763
Cellobiose phosphorylase
no
0.40
9
Psest
_4133
RNA polymerase sigma factor, sigma-70 family
no
0.40
10
Psest
_2922
Lhr-like helicases
no
0.39
11
Psest
_3660
PAS domain S-box
0.52
0.38
12
Psest
_0751
Arabinose efflux permease
no
0.38
13
Psest
_2886
hypothetical protein
no
0.38
14
Psest
_4169
ATPase FliI/YscN family
no
0.38
15
Psest
_2915
Glucose/sorbosone dehydrogenases
no
0.37
16
Psest
_4295
PAS domain S-box
no
0.37
17
Psest
_3445
Aerobic-type carbon monoxide dehydrogenase, middle subunit CoxM/CutM homologs
no
0.37
18
Psest
_2884
HAD-superfamily phosphatase, subfamily IIIC/FkbH-like domain
no
0.37
19
Psest
_0562
magnesium-translocating P-type ATPase
no
0.36
20
Psest
_4259
Multidrug resistance efflux pump
no
0.35
Or look for
negative cofitness