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  • Top cofit genes for Psest_2235 from Pseudomonas stutzeri RCH2

    DNA damage response nuclease (from data)
    Original annotation: VRR-NUC domain.
    SEED: Hypothetical protein, restriction endonuclease-like VRR-NUC domain

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_2236 Rad3-related DNA helicases 0.62 0.65
    2 Psest_3090 DNA repair protein RecO 0.70 0.63
    3 Psest_2259 excinuclease ABC, C subunit 0.70 0.58
    4 Psest_0004 recF protein 0.64 0.57
    5 Psest_1296 excinuclease ABC, B subunit 0.62 0.56
    6 Psest_3576 excinuclease ABC, A subunit 0.64 0.56
    7 Psest_0962 DNA repair protein RecN 0.60 0.55
    8 Psest_2545 recombination protein RecR 0.59 0.55
    9 Psest_1869 ATP-dependent DNA helicase RecQ 0.58 0.54
    10 Psest_1653 transcription-repair coupling factor (mfd) 0.50 0.53
    11 Psest_3401 DNA repair protein RadA 0.56 0.50
    12 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.53 0.39
    13 Psest_1525 Uncharacterized protein conserved in bacteria 0.39 0.31
    14 Psest_2410 Superfamily I DNA and RNA helicases no 0.27
    15 Psest_2857 Rad3-related DNA helicases 0.52 0.26
    16 Psest_4219 DNA polymerase I 0.24 0.26
    17 Psest_2648 hypothetical protein no 0.26
    18 Psest_3246 Protein of unknown function (DUF2914). 0.61 0.25
    19 Psest_1492 DNA-binding ferritin-like protein (oxidative damage protectant) 0.17 0.25
    20 Psest_1519 DNA polymerase elongation subunit (family B) 0.65 0.25

    Or look for negative cofitness