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  • Top cofit genes for Psest_1869 from Pseudomonas stutzeri RCH2

    ATP-dependent DNA helicase RecQ
    SEED: ATP-dependent DNA helicase RecQ
    KEGG: ATP-dependent DNA helicase RecQ

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_2259 excinuclease ABC, C subunit 0.73 0.62
    2 Psest_3090 DNA repair protein RecO 0.78 0.61
    3 Psest_0004 recF protein 0.93 0.61
    4 Psest_2545 recombination protein RecR 0.76 0.61
    5 Psest_3576 excinuclease ABC, A subunit 0.80 0.59
    6 Psest_1296 excinuclease ABC, B subunit 0.73 0.58
    7 Psest_2236 Rad3-related DNA helicases 0.51 0.58
    8 Psest_0962 DNA repair protein RecN 0.69 0.56
    9 Psest_2235 DNA damage response nuclease (from data) 0.58 0.54
    10 Psest_1544 single-stranded-DNA-specific exonuclease RecJ 0.91 0.51
    11 Psest_1653 transcription-repair coupling factor (mfd) 0.57 0.48
    12 Psest_3401 DNA repair protein RadA 0.80 0.46
    13 Psest_1525 Uncharacterized protein conserved in bacteria 0.55 0.34
    14 Psest_1519 DNA polymerase elongation subunit (family B) 0.73 0.29
    15 Psest_4219 DNA polymerase I 0.78 0.28
    16 Psest_1492 DNA-binding ferritin-like protein (oxidative damage protectant) 0.51 0.27
    17 Psest_2410 Superfamily I DNA and RNA helicases no 0.26
    18 Psest_3107 uracil-DNA glycosylase 0.36 0.26
    19 Psest_2727 Small-conductance mechanosensitive channel no 0.25
    20 Psest_3767 tyrosine recombinase XerC 0.60 0.25

    Or look for negative cofitness