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  • Top cofit genes for Psest_1653 from Pseudomonas stutzeri RCH2

    transcription-repair coupling factor (mfd)
    SEED: Transcription-repair coupling factor
    KEGG: transcription-repair coupling factor (superfamily II helicase)

    Rank Hit Name Description Conserved? Cofitness  
    1 Psest_1296 excinuclease ABC, B subunit 0.82 0.65
    2 Psest_2259 excinuclease ABC, C subunit 0.88 0.63
    3 Psest_3090 DNA repair protein RecO 0.96 0.61
    4 Psest_3576 excinuclease ABC, A subunit 0.96 0.59
    5 Psest_3401 DNA repair protein RadA 0.78 0.58
    6 Psest_0962 DNA repair protein RecN 0.89 0.56
    7 Psest_0004 recF protein 0.81 0.55
    8 Psest_2545 recombination protein RecR 0.95 0.54
    9 Psest_2235 DNA damage response nuclease (from data) 0.50 0.53
    10 Psest_2236 Rad3-related DNA helicases 0.39 0.50
    11 Psest_1869 ATP-dependent DNA helicase RecQ 0.57 0.48
    12 Psest_2857 Rad3-related DNA helicases 0.70 0.38
    13 Psest_1519 DNA polymerase elongation subunit (family B) 0.61 0.35
    14 Psest_4219 DNA polymerase I 0.67 0.32
    15 Psest_1525 Uncharacterized protein conserved in bacteria 0.35 0.32
    16 Psest_2285 ATP-dependent protease La 0.82 0.31
    17 Psest_1492 DNA-binding ferritin-like protein (oxidative damage protectant) 0.60 0.30
    18 Psest_3442 Beta-lactamase class A no 0.29
    19 Psest_2991 hypothetical protein no 0.28
    20 Psest_4098 Superfamily I DNA and RNA helicases 0.87 0.28

    Or look for negative cofitness