Top cofit genes for EX31_RS22250 from Rahnella sp. WP5

ATP-dependent protease ATP-binding subunit ClpX
SEED: ATP-dependent Clp protease ATP-binding subunit ClpX
KEGG: ATP-dependent Clp protease ATP-binding subunit ClpX

Rank	Hit	Name	Description	Conserved?	Cofitness
1	EX31_RS12400		RNA polymerase factor sigma-54	0.72	0.90
2	EX31_RS20495		outer membrane protein assembly factor BamB	0.43	0.89
3	EX31_RS18540		cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	0.78	0.88
4	EX31_RS22245		ATP-dependent Clp endopeptidase proteolytic subunit ClpP	0.94	0.87
5	EX31_RS02515		PAS domain-containing protein	no	0.86
6	EX31_RS06065		phosphate ABC transporter permease PstC	no	0.86
7	EX31_RS02530		ABC transporter ATP-binding protein	no	0.85
8	EX31_RS08695		outer membrane protein assembly factor	0.39	0.85
9	EX31_RS20175		cysteine synthase A	0.59	0.85
10	EX31_RS08690		translocation/assembly module TamB	0.38	0.84
11	EX31_RS03945		bifunctional aspartate kinase/homoserine dehydrogenase I	0.66	0.83
12	EX31_RS02520		sigma-54-dependent Fis family transcriptional regulator	0.57	0.83
13	EX31_RS06070		phosphate ABC transporter substrate-binding protein PstS	0.91	0.83
14	EX31_RS09855		orotidine-5'-phosphate decarboxylase	0.66	0.83
15	EX31_RS24385		dihydroorotase	0.64	0.83
16	EX31_RS03480		pyruvate dehydrogenase (acetyl-transferring), homodimeric type	0.76	0.82
17	EX31_RS15015		HTH-type transcriptional activator IlvY	0.64	0.82
18	EX31_RS07560		ATP-dependent chaperone ClpB	0.54	0.81
19	EX31_RS09965		anthranilate phosphoribosyltransferase	0.60	0.81
20	EX31_RS06150		transcriptional regulator AsnC	no	0.81

Or look for negative cofitness