Top cofit genes for EX31_RS18540 from Rahnella sp. WP5

cysteine/glutathione ABC transporter permease/ATP-binding protein CydD
SEED: Transport ATP-binding protein CydD

Rank	Hit	Name	Description	Conserved?	Cofitness
1	EX31_RS12400		RNA polymerase factor sigma-54	0.57	0.95
2	EX31_RS02515		PAS domain-containing protein	no	0.95
3	EX31_RS02520		sigma-54-dependent Fis family transcriptional regulator	no	0.93
4	EX31_RS02530		ABC transporter ATP-binding protein	no	0.91
5	EX31_RS22740		4-hydroxy-tetrahydrodipicolinate synthase	no	0.88
6	EX31_RS22250		ATP-dependent protease ATP-binding subunit ClpX	0.78	0.88
7	EX31_RS20495		outer membrane protein assembly factor BamB	no	0.86
8	EX31_RS20210		sulfate/thiosulfate ABC transporter ATP-binding protein CysA	0.67	0.86
9	EX31_RS20175		cysteine synthase A	no	0.85
10	EX31_RS21815		SoxR-reducing system protein RseC	no	0.85
11	EX31_RS08695		outer membrane protein assembly factor	0.46	0.85
12	EX31_RS09895		type I DNA topoisomerase	no	0.84
13	EX31_RS07560		ATP-dependent chaperone ClpB	no	0.84
14	EX31_RS22120		transcriptional regulator NrdR	no	0.83
15	EX31_RS03480		pyruvate dehydrogenase (acetyl-transferring), homodimeric type	no	0.82
16	EX31_RS08690		translocation/assembly module TamB	0.46	0.82
17	EX31_RS20220		sulfate/thiosulfate ABC transporter permease CysT	0.62	0.82
18	EX31_RS13280		LysR family transcriptional regulator	no	0.82
19	EX31_RS22245		ATP-dependent Clp endopeptidase proteolytic subunit ClpP	0.86	0.82
20	EX31_RS06070		phosphate ABC transporter substrate-binding protein PstS	no	0.81

Or look for negative cofitness