Top cofit genes for EX31_RS12400 from Rahnella sp. WP5

RNA polymerase factor sigma-54
SEED: RNA polymerase sigma-54 factor RpoN
KEGG: RNA polymerase sigma-54 factor

Rank	Hit	Name	Description	Conserved?	Cofitness
1	EX31_RS18540		cysteine/glutathione ABC transporter permease/ATP-binding protein CydD	no	0.95
2	EX31_RS02515		PAS domain-containing protein	no	0.95
3	EX31_RS02520		sigma-54-dependent Fis family transcriptional regulator	0.45	0.93
4	EX31_RS02530		ABC transporter ATP-binding protein	no	0.92
5	EX31_RS22250		ATP-dependent protease ATP-binding subunit ClpX	0.57	0.90
6	EX31_RS22740		4-hydroxy-tetrahydrodipicolinate synthase	no	0.90
7	EX31_RS20495		outer membrane protein assembly factor BamB	0.76	0.89
8	EX31_RS20175		cysteine synthase A	0.80	0.89
9	EX31_RS08695		outer membrane protein assembly factor	0.87	0.87
10	EX31_RS22120		transcriptional regulator NrdR	0.72	0.87
11	EX31_RS03945		bifunctional aspartate kinase/homoserine dehydrogenase I	0.92	0.87
12	EX31_RS06160		ATPase RavA	no	0.86
13	EX31_RS06070		phosphate ABC transporter substrate-binding protein PstS	0.45	0.86
14	EX31_RS08690		translocation/assembly module TamB	0.90	0.86
15	EX31_RS13280		LysR family transcriptional regulator	0.74	0.85
16	EX31_RS15015		HTH-type transcriptional activator IlvY	0.92	0.85
17	EX31_RS20210		sulfate/thiosulfate ABC transporter ATP-binding protein CysA	0.71	0.85
18	EX31_RS22245		ATP-dependent Clp endopeptidase proteolytic subunit ClpP	0.78	0.85
19	EX31_RS21815		SoxR-reducing system protein RseC	no	0.85
20	EX31_RS03480		pyruvate dehydrogenase (acetyl-transferring), homodimeric type	0.94	0.85

Or look for negative cofitness