Top cofit genes for EX31_RS09420 from Rahnella sp. WP5

trifunctional transcriptional regulator/proline dehydrogenase/L-glutamate gamma-semialdehyde dehydrogenase
SEED: Transcriptional repressor of PutA and PutP / Proline dehydrogenase (EC 1.5.99.8) (Proline oxidase) / Delta-1-pyrroline-5-carboxylate dehydrogenase (EC 1.5.1.12)

Rank	Hit	Name	Description	Conserved?	Cofitness
1	EX31_RS08965		aspartate ammonia-lyase	0.90	0.52
2	EX31_RS13945		3-deoxy-7-phosphoheptulonate synthase	0.88	0.48
3	EX31_RS06045		TetR family transcriptional regulator	0.20	0.46
4	EX31_RS14165		Si-specific NAD(P)(+) transhydrogenase	0.76	0.45
5	EX31_RS23265		glucosamine-6-phosphate deaminase	no	0.43
6	EX31_RS25435		bacterioferritin-associated ferredoxin	no	0.42
7	EX31_RS04215		L-serine ammonia-lyase	no	0.42
8	EX31_RS18570		cold shock-like protein CspD	0.33	0.39
9	EX31_RS24285		DUF1493 family protein	no	0.39
10	EX31_RS11115		creatininase family protein	no	0.37
11	EX31_RS10280		alpha-glucosidase	no	0.37
12	EX31_RS23455		succinate--CoA ligase subunit alpha	0.61	0.37
13	EX31_RS14330		tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	0.21	0.36
14	EX31_RS00100		ABC transporter substrate-binding protein	0.18	0.36
15	EX31_RS06535		GMC family oxidoreductase	no	0.36
16	EX31_RS09530		hypothetical protein	no	0.36
17	EX31_RS02070		cytochrome ubiquinol oxidase subunit I	0.57	0.35
18	EX31_RS15730		dipeptide/tripeptide permease DtpA	no	0.35
19	EX31_RS15620		branched-chain amino acid ABC transporter permease	0.75	0.35
20	EX31_RS18620		N-acetylmuramoyl-L-alanine amidase	0.54	0.35

Or look for negative cofitness