Top cofit genes for EX31_RS06000 from Rahnella sp. WP5

tRNA uridine-5-carboxymethylaminomethyl(34) synthesis GTPase MnmE
SEED: GTPase and tRNA-U34 5-formylation enzyme TrmE
KEGG: tRNA modification GTPase

Rank	Hit	Name	Description	Conserved?	Cofitness
1	EX31_RS06140		tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	1.00	0.88
2	EX31_RS14010		bifunctional UDP-4-amino-4-deoxy-L-arabinose formyltransferase/UDP-glucuronic acid oxidase ArnA	no	0.77
3	EX31_RS20480		hypothetical protein	no	0.75
4	EX31_RS03745		RNA polymerase-associated protein RapA	0.63	0.74
5	EX31_RS22245		ATP-dependent Clp endopeptidase proteolytic subunit ClpP	0.67	0.74
6	EX31_RS04750		peptidoglycan glycosyltransferase/peptidoglycan DD-transpeptidase MrcA	0.68	0.72
7	EX31_RS21190		ribonuclease HI	no	0.72
8	EX31_RS19600		tRNA pseudouridine(38-40) synthase TruA	0.84	0.71
9	EX31_RS20495		outer membrane protein assembly factor BamB	0.59	0.71
10	EX31_RS12420		3-deoxy-manno-octulosonate-8-phosphatase KdsC	0.87	0.71
11	EX31_RS22250		ATP-dependent protease ATP-binding subunit ClpX	0.58	0.70
12	EX31_RS19480		acetate kinase	0.92	0.69
13	EX31_RS20450		IMP dehydrogenase	0.87	0.69
14	EX31_RS19780		tRNA-Arg	no	0.69
15	EX31_RS25340		hypothetical protein	no	0.68
16	EX31_RS21785		ATP-dependent RNA helicase SrmB	0.74	0.68
17	EX31_RS18785		DUF2384 domain-containing protein	0.25	0.68
18	EX31_RS06065		phosphate ABC transporter permease PstC	no	0.68
19	EX31_RS24385		dihydroorotase	0.54	0.68
20	EX31_RS14620		SCP2 domain-containing protein	no	0.68

Or look for negative cofitness