Top cofit genes for EX31_RS02040 from Rahnella sp. WP5

ABC transporter permease subunit
SEED: Dipeptide transport system permease protein DppC (TC 3.A.1.5.2)
KEGG: peptide/nickel transport system permease protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	EX31_RS12500		stringent starvation protein A	no	0.51
2	EX31_RS12505		ClpXP protease specificity-enhancing factor	no	0.51
3	EX31_RS17785		[citrate (pro-3S)-lyase] ligase	no	0.46
4	EX31_RS22170		tRNA 4-thiouridine(8) synthase ThiI	no	0.45
5	EX31_RS21825		elongation factor 4	0.25	0.45
6	EX31_RS11605		helix-turn-helix transcriptional regulator	0.24	0.45
7	EX31_RS06605		electron transport complex subunit RsxD	0.27	0.44
8	EX31_RS25685		DUF2627 domain-containing protein	no	0.43
9	EX31_RS19690		50S ribosomal protein L3 N(5)-glutamine methyltransferase	no	0.42
10	EX31_RS07155		exoribonuclease II	no	0.42
11	EX31_RS07560		ATP-dependent chaperone ClpB	no	0.42
12	EX31_RS11860		zinc uptake transcriptional repressor Zur	no	0.42
13	EX31_RS12175		DNA-binding transcriptional regulator Fis	no	0.42
14	EX31_RS11815		glucose-6-phosphate isomerase	0.40	0.41
15	EX31_RS20515		cytoskeleton protein RodZ	no	0.41
16	EX31_RS13640		L-valine transporter subunit YgaH	0.27	0.41
17	EX31_RS25470		LysR family transcriptional regulator	no	0.41
18	EX31_RS17955		SDR family oxidoreductase	no	0.41
19	EX31_RS04565		uracil/xanthine transporter	no	0.41
20	EX31_RS06065		phosphate ABC transporter permease PstC	0.32	0.40

Or look for negative cofitness