Top cofit genes for EX31_RS01095 from Rahnella sp. WP5

metal ABC transporter permease
SEED: Manganese ABC transporter, inner membrane permease protein SitD
KEGG: manganese/iron transport system permease protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	EX31_RS02125		helix-turn-helix transcriptional regulator	no	0.48
2	EX31_RS10680		zinc ABC transporter ATP-binding protein ZnuC	no	0.38
3	EX31_RS21445		oxidative stress defense protein	no	0.36
4	EX31_RS14470		JAB domain-containing protein	no	0.36
5	EX31_RS00520		PadR family transcriptional regulator	no	0.36
6	EX31_RS11360		chemotaxis response regulator protein-glutamate methylesterase	0.85	0.35
7	EX31_RS02550		MATE family efflux transporter	no	0.34
8	EX31_RS01975		type VI secretion system baseplate subunit TssF	no	0.34
9	EX31_RS17445		PLP-dependent aminotransferase family protein	0.26	0.33
10	EX31_RS15665		YcjX family protein	no	0.33
11	EX31_RS03270		two-component system sensor histidine kinase QseC	no	0.32
12	EX31_RS06875		Mal regulon transcriptional regulator MalI	no	0.31
13	EX31_RS15475		4-oxalocrotonate tautomerase family protein	no	0.31
14	EX31_RS10040		YciU family protein	no	0.30
15	EX31_RS02600		ABC transporter substrate-binding protein	no	0.30
16	EX31_RS19205		50S ribosomal protein L25	no	0.30
17	EX31_RS19795		hypothetical protein	no	0.30
18	EX31_RS17740		RluA family pseudouridine synthase	no	0.30
19	EX31_RS03485		pyruvate dehydrogenase complex transcriptional repressor PdhR	no	0.30
20	EX31_RS11565		PLP-dependent aminotransferase family protein	no	0.29

Or look for negative cofitness