Top cofit genes for EX31_RS00700 from Rahnella sp. WP5

ABC transporter permease
SEED: Nucleoside ABC transporter, permease protein 1
KEGG: peptide/nickel transport system permease protein

Rank	Hit	Name	Description	Conserved?	Cofitness
1	EX31_RS21205		murein transglycosylase D	no	0.59
2	EX31_RS00340		MFS transporter	no	0.54
3	EX31_RS13495		FAD assembly factor SdhE	no	0.54
4	EX31_RS15890		Der GTPase-activating protein YihI	no	0.54
5	EX31_RS03490		aromatic amino acid transporter AroP	no	0.53
6	EX31_RS06450		ABC transporter substrate-binding protein	no	0.53
7	EX31_RS13240		HTH-type transcriptional regulator GalR	no	0.51
8	EX31_RS19120		bifunctional murein DD-endopeptidase/murein LD-carboxypeptidase	no	0.51
9	EX31_RS12215		type II 3-dehydroquinate dehydratase	no	0.51
10	EX31_RS25980		DUF1249 family protein	no	0.51
11	EX31_RS08645		malate dehydrogenase	0.38	0.49
12	EX31_RS20705		LysR family transcriptional regulator	no	0.49
13	EX31_RS12225		protein-methionine-sulfoxide reductase catalytic subunit MsrP	no	0.49
14	EX31_RS23260		N-acetylglucosamine-6-phosphate deacetylase	no	0.49
15	EX31_RS06330		exodeoxyribonuclease III	no	0.49
16	EX31_RS05865		type II toxin-antitoxin system RelE/ParE family toxin	no	0.48
17	EX31_RS04185		rhamnulose-1-phosphate aldolase	no	0.47
18	EX31_RS13925		FAD-binding oxidoreductase	no	0.47
19	EX31_RS08670		class 1 fructose-bisphosphatase	no	0.47
20	EX31_RS19090		elongation factor P-like protein YeiP	no	0.47

Or look for negative cofitness